Scaffold Ga0228636

Basic Information
Taxon OID	3300024191 Open in IMG/M
Scaffold ID	Ga0228636_1000090 Open in IMG/M
Source Dataset Name	Seawater microbial communities from Monterey Bay, California, United States - 45D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024191 Open in IMG/M

Scaffold ID

Ga0228636_1000090 Open in IMG/M

Source Dataset Name

Seawater microbial communities from Monterey Bay, California, United States - 45D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	23786
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (12.50%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

23786

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (12.50%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.8313	Long. (^o)	-121.9047	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

36.8313

Long. (^o)

-121.9047

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002407	Metagenome / Metatranscriptome	562	Y
F004479	Metagenome / Metatranscriptome	436	Y
F032990	Metagenome / Metatranscriptome	178	N
F064737	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0228636_10000902	F002407	N/A	METTINKIDGYELSSFVRKLLPIDKFIFMKIAKEGTVSSVYFPERDAVKLVNTPTSDIFDADIKEPVKVSFYNGTKVIDALSHFNGDVKGRIKYTEYDGELMASDFILENEDLQINLACTDPSLSFMEMSKEETDRAFGVDSKMFDFDLLTTHVDKMKSLFNLDKDEDIFTLYIGEKGINIKGTSYDATLCHSYDSNVEKGAKVVIYKKYINLLDKENYKVSVCENKVVFRSLDTNTHLTVAVAITDED
Ga0228636_100009023	F032990	N/A	MIPRIKLYAETLYPLLKWYDENPDDKDTKYAISRIIRFSSDNPRQHGIPYMYSLGALNEAKKMEIPDAEERLQWVRWKEQNHKSGLRDIGRQNGIFHQEHIVPVSQIAKKLYGLEKITVKNIHDVLINNLKIAWILKTEQKTLDAVCRSGIRTPELLTSLDIYIKGFNC
Ga0228636_100009027	F064737	N/A	MENDWYNSDPEDGFNPQDHDIEMDEIAKMYAMADMEEEQKTWAKRQAEKFYSDFDNLSIEESVLAVKSLVKTKSVSISEANTLLDNMIQVFQEDEEYEKCHICLQIKNGINA
Ga0228636_10000908	F004479	N/A	MHTGKVLVGNSGDRVYLHDNKVVKEAGVYPIKFKQQMDWLANCTHPNFIKIRPLSDTSFEMDKYPTWYDKICEQPLIKSIDQLDDLIHIVNDFDGYGTDVDTRSYLDKLEGRTGYTYEGNLDASSGWGFVHGDLTVSNILYDNDFIFIDPRGTEEQNYYDYGKLMQSFVMKYEAHIYNERNSKYLKFCREAENIMYEWYDEYQLKFFLAVHLLGAVPFFELNERYELAGMFLKKGHELFDELEIKYSK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0228636_1000090

Overview

Ecosystem & Geography

Associated Families

Sequences