NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228636_1000045

Scaffold Ga0228636_1000045


Overview

Basic Information
Taxon OID3300024191 Open in IMG/M
Scaffold IDGa0228636_1000045 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 45D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31674
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (10.34%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039623Metagenome / Metatranscriptome163N
F101148Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0228636_100004532F039623N/AMELLDSNNIITFRKFKCLNTNQIYEIVQTECTGRYIINSIDTIVRSDGLRKSFARMELKTRFNNIEGIPEKDYLIKKKKKR
Ga0228636_100004546F101148N/AMTTKISITTAFKILNSNKDFIFYRVENQRLIDFTLSNDISRFRARYNNKFKILDDIKKQIKTNLKIQL

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