NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228669_1051612

Scaffold Ga0228669_1051612


Overview

Basic Information
Taxon OID3300024185 Open in IMG/M
Scaffold IDGa0228669_1051612 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 84D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)841
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016393Metagenome247N
F027052Metagenome / Metatranscriptome196N

Sequences

Protein IDFamilyRBSSequence
Ga0228669_10516121F016393GAGMARGEINPVLGMTEGRFRTMVKSALRPCWRNSSRKTFIQSVRTRGINPATGRERFVVVCVDCGKEMGITEKERRKKLDGTLEKRAKIVYEIDHVDGITPLTNVQTLESLTPHFRDMIYGKQEVVCVACHKVRTANQRKNKSK
Ga0228669_10516122F027052N/AHYQHNRTMTTDLDEARQYADTMLEALDVMGRAMYFCLNHPNSPEFKEHRKLLIGAHERMGKDTTDMLAQLDIPEPPYEPTKEELAQHG
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