NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228603_1031272

Scaffold Ga0228603_1031272


Overview

Basic Information
Taxon OID3300024183 Open in IMG/M
Scaffold IDGa0228603_1031272 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)774
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016663Metagenome / Metatranscriptome245N
F062669Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0228603_10312721F016663GAGGMLRYGKNTKKYKTEITMGKIRTYNVEAAKQLADRFVEVTKVDLTSTSRHQEEAYFRALLYKIMVDINGMNDRMISDWFQDIGVKRNRSSIFHALKKIDVYYESYVKFRNVYDLFFDDKKKERERIENKKSERIRIINERITKKLETGERNKIHELADVIPEDRIEEMYEMMTLRIKSWSWKSKDKCQIIESSTSMEGMHW
Ga0228603_10312722F062669N/AKTNNDAQSHCFKKGYVIYPEAFEGSWRVSIELGHKKHTYPDILSLTEAYVKIWKEYEKIQNRDNNGKN
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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