Scaffold Ga0228603_1001657

Overview

Basic Information

• Taxon OID: 3300024183
• Scaffold ID: Ga0228603_1001657
• Source Dataset Name: Seawater microbial communities from Monterey Bay, California, United States - 3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2604
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004952	Metagenome	417	Y
F005843	Metagenome / Metatranscriptome	388	Y
F020173	Metagenome	225	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0228603_10016574	F004952	AGGAG	MNLTHTHEFLITHITDSGTGFGVRTDNGESVHISPRLLQQAHANLDDICIGIIVQNAVEDQRERTPWVAAYVQERRAARDVLGLATDVPAEAVQAPTEEPKQVDWADVQRRIIAMLQSADVTYCETADISDVVGVEPRKLSQHLENMHARGEICRAHVNQRANQQRATLVLWSINADVYK
Ga0228603_10016575	F020173	GGA	MICTTCDGTGFIELPRFVNTPDSDAWTTVRCPECQDEDEFDWRNEEEEE
Ga0228603_10016578	F005843	N/A	MMALALRLNMKVGLKMTLAEPVFMAFAVFSSVDECKAFAKYYDLARIFEPQCVEMGGEADYRRPWPDVRPQPRPT