Scaffold Ga0228603_1000013

Overview

Basic Information

• Taxon OID: 3300024183
• Scaffold ID: Ga0228603_1000013
• Source Dataset Name: Seawater microbial communities from Monterey Bay, California, United States - 3D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37082
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (8.20%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001728	Metagenome / Metatranscriptome	645	Y
F020796	Metagenome / Metatranscriptome	222	Y
F024892	Metagenome / Metatranscriptome	204	Y
F043391	Metagenome	156	N
F069992	Metagenome	123	Y
F097122	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0228603_100001324	F097122	N/A	MKEQLKDKILSIRPEYSTEGFSSNPLPNEVSIYYEGEDYTIDLFLDINEVLRIDILEGEDVYPLSDADVTFICGYLSGLLEYQIEITKNYYEAERGEQDNYYYYS
Ga0228603_100001331	F043391	N/A	MNINILKAVQIYTTKKDFIIYTETNNNLDKMILTNDLTRHRKKFGINSKFLLTNVIKKELKTININL
Ga0228603_100001337	F069992	N/A	MFTLKINNNLSRKLQTTNKGFICYNLTQDRTQIDSYILTNDLYRYKNRFQSFKAISCIKKQFNTITF
Ga0228603_10000134	F024892	N/A	MSKEYKRKQYSFSLHKVDYTDSYTEEMDCEGLSVLKWSMFDSPDKLGSGKYFMESEPVFILDEVFRKDRMSGFILQGYTSKTYADKIALPSNSGHRVGKSIKFRCINKTKRFKMIRGLIQYGIERIQVTNDWIYFDTDNYLKDPEFICV
Ga0228603_100001348	F020796	N/A	MIRQTLELLRNNEWLIEDKDVNIAKGLYEMPSSFRELKTSIKRKKLTNGR
Ga0228603_10000138	F001728	N/A	MNSIELKATGKEDHYRLILNGVDVTGEQERSVFRHIIETIDNGIEVGI