Scaffold Ga0247669_1000179

Overview

Basic Information

• Taxon OID: 3300024182
• Scaffold ID: Ga0247669_1000179
• Source Dataset Name: Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31751
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (84.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 40.4449
  • Long. (^o): -87.0297

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002579	Metagenome / Metatranscriptome	546	Y
F007129	Metagenome / Metatranscriptome	357	Y
F031217	Metagenome	183	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247669_100017924	F007129	AGGA	MNPGVIGALIPIVAIVAVAAVRIAKMFAVRPQTTSTDVTARLETLERSLQSLEQQLAETQERLDFTERLLTKARDEHRIGT
Ga0247669_100017929	F031217	GAG	MITRGALAFACAALVPFALSGQAPPPEPVVWHWFATCGSADSLTLDVTADGKAIYDSTFAICHLRRTEIKPEPQERLLTFTFDAAPRRFGPQYHATEPERIVGTVWEAGRKGDAIVLGVSFATAERVLLNTRHVARPDRAGRSEWIRGLVVTTRPVRHARASPN
Ga0247669_100017932	F002579	N/A	MTEAHTAKLRALLQAYAERAPRVHPADKPLEEEPSRRECGERLRAVVRPVLDAAMAELKQAGHEASVREHIERTDAYPSVALSFTPRRGLASALIFRYDPRHGIVVQRDVKQAPWKGRPPTGTGDRLGTIGITAVSEAWVETKTLSFIEAVLKAN