Scaffold Ga0247669_1000014

Overview

Basic Information

• Taxon OID: 3300024182
• Scaffold ID: Ga0247669_1000014
• Source Dataset Name: Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 194147
• Total Scaffold Genes: 171
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 131 (76.61%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 40.4449
  • Long. (^o): -87.0297

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001500	Metagenome / Metatranscriptome	682	Y
F016836	Metagenome / Metatranscriptome	244	Y
F024185	Metagenome / Metatranscriptome	207	Y
F035029	Metagenome / Metatranscriptome	173	Y
F051723	Metagenome / Metatranscriptome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247669_1000014100	F016836	AGG	MRRFAAVFLCSVCVFTAAVRGQGAKIEAIHAPMGTVLEFHLQTRLNPVDRNELDVLPRGTVIRVKLLSAVDSNVDRDGSVFHGEVVESVSAGSKVIVHPESEVRGILVLLRSRNHPEGFRYELLVTSLTDHEKTYDVTASLNPSFFDGGAPPAAISRAESPGDAKSAEAGAASLPAPLDN
Ga0247669_1000014155	F051723	GGAGG	MSLSAKQMLFGATLLLAGSPLFANESAAKSGVAPAPRAFVNCPGISNVPMTADAEQALPMRQIATLSCGQQVAILADNEGYTTHIRTSDGKDGYVARMYLTTATPAAQPTLEFDEPAPVTNATPVNGIVRWNAGAPGCDQFISRGRKVESATSNGITVQVSLQDTGWKLHASVAVSNAGTAQVYVHPSLVTLDELTPTLRNLREEDPSKLAHNEVNHQLMRSEYVAVPPPSAIVLHSRSTARVAPATYHTTAVDDYLGFNDESASVRAVALKSANLAPGQKTSGDLWYARDSNARELSLRISVGDQIFDFPFSFE
Ga0247669_1000014159	F001500	N/A	MSDTDPLAGIVPRRAHPRIDGETAITEHIEKIEGEVALDSYVKAQTSAPEVVKRINELENCLQRLANAALELSDVAKHTELRSAAEEAKLVLKNRLEVDDTKHRFHSELGVFKDELRIIK
Ga0247669_100001425	F035029	GAG	MPQCFPLFRRTFSPRRGEQRGWLLALALAGLAGCGGAGKTDDPQLKPIQAMLEKELPRRTPEEKVVLYLDNHGYSILAAQKQGTIVAIIRRKDTAAVQPVAARVTFYFDANRKLNTFELQRPENVPSQR
Ga0247669_100001434	F024185	AGG	MQTVYYSLMKKLLAVVVVVACGILLGRPATGQQAKPLRTSILDAHEGVTIGVEPWTQASRYKERFPKKSPFAVGIVALKLSIRNDNDEAVKLTLRRIRLLVQLDAENRQELEALTADDVADAVMLRQSGKDPTARRLPIPLPINRPKPTRDKNWEEFRGDCQNAGIPSGVIGAHSTMEGLVYFDLRGELDLLQTARLYVPDLQKMTSQEAISYFDIDFSRGTAN