Scaffold Ga0247669_1000013

Overview

Basic Information

• Taxon OID: 3300024182
• Scaffold ID: Ga0247669_1000013
• Source Dataset Name: Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 208163
• Total Scaffold Genes: 182
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 134 (73.63%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 40.4449
  • Long. (^o): -87.0297

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000092	Metagenome / Metatranscriptome	2385	Y
F001986	Metagenome / Metatranscriptome	608	Y
F027003	Metagenome / Metatranscriptome	196	Y
F046499	Metagenome / Metatranscriptome	151	Y
F083789	Metagenome / Metatranscriptome	112	Y
F094305	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247669_1000013102	F027003	GGAGG	MAIMHCRSIERRRTARAVVSIQMEVSGVSEGQQPFKFATRTISVSQHGGVILLDMPLPVGQKFEMVNEFNNRKATCRIVTVRVGKEGKLHGAFELHCPEGNFWSMSFPAAGARPMKRVFVAKSVVR
Ga0247669_1000013106	F000092	GAG	VKQHLGRQSGVQNVEVSLLDGKVEVTPKEDGQIEPEQLLKATYDSGVTAAEMTMTARGKIVKDASGTLAFQVVPNRSFALTPNELSNGLEAFADTPTMVTVRGQLYKKPVGKKKSAPSTPLKLLILEVEKRE
Ga0247669_1000013136	F094305	GAGG	MNPDIRKKAAVWLALVFIIGTATGGVFGYSLARRSYAANKTVMPSEAERRAKKLAEMTQEIGLNPEQAQKADGIIKAAQTEIRGIREKNDAEVDVVRMRTRGEMRTFLTPEQLPKFEAYVRRMDEEKKKQKEAQGR
Ga0247669_1000013173	F001986	N/A	MRYNIFAPQGDAAYGLLVCSVCNKNVTFELEHQADLASYGEGSRALSMLGSPKPPDVERKKLDGDAALDDKTL
Ga0247669_100001360	F046499	N/A	VKEKAQRILLWITGLLLLLFAVPTKYVASALNPESYKQNEQGLEKQFEAFLKAYQRGDDKGMDEGFAVFRLPKGQEWFEEHFSAEDAAKLSSVYEREVSDAEASLIEDMNKADPGSRFRVRCEARGESGAGQGSTGGYGFKPVKPIAVEQFRLEFRSGSHDQKFSFIANFVYVDGAYRFVGGGGVAFWARPSAGR
Ga0247669_100001396	F083789	GAGG	MASTPFQPPIRKSLTLSLTWLLAAILFAVTIENIWLDPWLKSRFPDFPSLAPQPPSALWIVTFGAIGIVCVVLMVGQVLLMRRAGVTRNSKIVAGVSVILALLLSVTWFLVTSGITAAPRLLMFSPGTTVKLTWIASTTPGVTYNVYRVTESSGKTERLNTAPITDLSFTDRHPAEGEKYTYYVTAVAGTTESAHSNSAKAAIPPS