Scaffold Ga0247669

Basic Information
Taxon OID	3300024182 Open in IMG/M
Scaffold ID	Ga0247669_1000012 Open in IMG/M
Source Dataset Name	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK10
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024182 Open in IMG/M

Scaffold ID

Ga0247669_1000012 Open in IMG/M

Source Dataset Name

Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK10

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	227811
Total Scaffold Genes	189 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	159 (84.13%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

227811

Total Scaffold Genes

189 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

159 (84.13%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location Name	USA: Indiana
Coordinates	Lat. (^o)	40.4449	Long. (^o)	-87.0297	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Indiana

Coordinates

Lat. (^o)

40.4449

Long. (^o)

-87.0297

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000789	Metagenome / Metatranscriptome	891	Y
F015633	Metagenome / Metatranscriptome	253	Y
F031163	Metagenome / Metatranscriptome	183	Y
F038452	Metagenome / Metatranscriptome	166	Y
F066203	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247669_100001243	F015633	N/A	VGKLAALAWFRKVKIPIYEKPRVLAVMLVCLFLPGLAAAQAEPPKKVTWKSVEFAIVRFNDQAPNTWSIYHSEKKGVLLVRLWKRYMLVKIQDEEVYDIDPQKIKVNGDSVEWSYADIPDKPIEVVEWKERNIGSMQRVTFRLGKNGHILELQIPLGLNREPLY
Ga0247669_100001259	F066203	N/A	MVGPLQLQTAAWALTSALELGLFAQLLRRKLGRVYPVFFAYLLSTILQSIAVAALYRAGNFDKLTTWKIAWLTQGLVVFLRALVLIELARKVLSGYIGIWALARRILLGVAASVFAYDLLLSKGQWQWLIMNGVRGLELAMAAVIVTMLMFARYYRLPVSPLQRSLAVGLCLYSIFYVVNYSLLENVLQEYAVLWNFLGIFAFIASLLLWTTAVTQYSESEEVVPAPEIPPELHGKLTAEVNTRLYLLNRQLIQFFRVKDRRS
Ga0247669_100001260	F038452	AGGA	MSLAVILLILFALLLVALLAWALRPPAGPVRPPLDVFEALSRSRHCLRISQVVNALQPEDTEYLRDTGQLALMQTLRRQRRQIALNYLNQLQEEFQELIEISRLLAVMSPEAIGIEEMERWRLSLAFAVNCAFLRWKLRLGLQPFSGFAMLSGMAISVARQLDFASTRIAEAAMRTANPTGSGDENIGGF
Ga0247669_100001266	F000789	AGCAG	MKAEQAKMSASWKAEGRLSEAWVVADPEIVEIFSAGVAFGMEVGRRVRTDPAYSPDEWRRALREAVESAAAVEDKLERAGEAIPKKEKE
Ga0247669_100001290	F031163	GGAGG	VPGLGISVRMLLGFAALSCSIALLPLGAQELSDTQGQKQVPAPPANARRTFDASLIPAVRDFRLDLMLGDAPGYNSSRPRSDASNFEKLLWTSSPGTIQRMESAFYCNDTPFVDQVRLPLATFWRGRVKLIGFESDVTTANFVMGLPGQGALHNLSAFGGNGFLAVHTPPSDQLAGIHMTFSWHGSEVESGESSGLRGLEYLVRAGRGFLPFFNGRSDSSSSALP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0247669_1000012

Overview

Ecosystem & Geography

Associated Families

Sequences