Scaffold Ga0247669

Basic Information
Taxon OID	3300024182 Open in IMG/M
Scaffold ID	Ga0247669_1000010 Open in IMG/M
Source Dataset Name	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK10
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024182 Open in IMG/M

Scaffold ID

Ga0247669_1000010 Open in IMG/M

Source Dataset Name

Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK10

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	251260
Total Scaffold Genes	239 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	196 (82.01%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

251260

Total Scaffold Genes

239 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

196 (82.01%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location Name	USA: Indiana
Coordinates	Lat. (^o)	40.4449	Long. (^o)	-87.0297	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Indiana

Coordinates

Lat. (^o)

40.4449

Long. (^o)

-87.0297

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002112	Metagenome / Metatranscriptome	592	Y
F006029	Metagenome / Metatranscriptome	383	Y
F007192	Metagenome / Metatranscriptome	356	Y
F023916	Metagenome / Metatranscriptome	208	Y
F033916	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247669_1000010167	F023916	GAG	MLSPARLTQLLMEFVFLLLGALVMWLAANGRIYFDRRGTAWLILSVGLIAWGLLALAKPGQIWAKWQKWNRGGSLLLLGVVMLAISRVPFDWVVRLLGAAGFILMVRGIFGGLFILRQR
Ga0247669_10000103	F007192	AGGA	MLPKLSRPTLAALLLLALATSAFARGQFWDFLGYTQVDGGQDHGRIMVTRRSGLFHTIQLRVSGDAIFFDRFIVHFSNGTSKEFVVSGRISPEGKYYVMDLSGEDRLLESVELRYYKEAWGHIPKVSLYGVHSEDGDHSNIAQEQ
Ga0247669_100001040	F002112	AGTAG	LPGPGDQIHDLNPTTFPPVGLFWTTEIPVTGVDVHLGKGSASLQASNVAILDYGFIPNALFGGGPPPVPGTVSFKVVWSGVDQRLNITNTDPVFGGFAGEFVRNTAQMEWNAVVGDYTFVSDPIATSSSSFAEIGHERNGSFFE
Ga0247669_100001044	F006029	AGGAG	MKISFLLVSTGILFTVLGCSGSSQKDVSKSTPTVVQASGVPASTAPAAEPAAALPVPSVGKANQQAWHSENVEDRLGGAIVLKGTSLDSKFDLVILQKGKYSFVSFVRHARWESVSKHPAKGKLVYLRVKFEDGQEKRIEWDELGFATENLYSVLWSYPGKTDAPIGPVQGGATGDSVGGDQLLLEDMMKHKTMLLEVEPGVTTQFDMTGLAHEILKARSLKSQPILEASQTAE
Ga0247669_100001095	F033916	GGAG	LTSTAHNGSSRGIAGFLACAALFAASFAAFTARADNPPADAIGVIEGEAISVEGPMTVEVVRGQVKTLLRSGSDVHVKAGQARIDLVEGGQIMICGPAHFSLLKAGSAITLALDSGTIHAVIGNEVSLNIYTPQIQAHPISIGNGAEDVLVGLDSTGAMCVRANKGAVRVEQQLTGQTVLVPQSGDVSLTNGQIESLQAATGHCTCSMQAVIKPMTPGTEISQLATTEEIKKRAADPKPAAPPEKPEQTTQSDEPIYQVFMPPLRYDAKTKVQDDFDPNLIILVRRVRVRPTLIFQGRVEGDAVVAQAASPANSAKSPAAPQAAPETSTWTRVKTYFRKLWSPST

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0247669_1000010

Overview

Ecosystem & Geography

Associated Families

Sequences