Scaffold Ga0247669_1000002

Overview

Basic Information

• Taxon OID: 3300024182
• Scaffold ID: Ga0247669_1000002
• Source Dataset Name: Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 552292
• Total Scaffold Genes: 507
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 409 (80.67%)
• Novel Protein Genes: 24
• Novel Protein Genes with Ribosome Binding Sites (RBS): 20 (83.33%)
• Associated Families: 24

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 40.4449
  • Long. (^o): -87.0297

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000188	Metagenome / Metatranscriptome	1692	Y
F000512	Metagenome / Metatranscriptome	1064	Y
F000739	Metagenome / Metatranscriptome	913	Y
F000781	Metagenome / Metatranscriptome	895	Y
F001909	Metagenome / Metatranscriptome	619	Y
F002853	Metagenome / Metatranscriptome	526	Y
F006125	Metagenome / Metatranscriptome	381	Y
F006229	Metagenome / Metatranscriptome	378	Y
F015120	Metagenome / Metatranscriptome	257	Y
F016298	Metagenome / Metatranscriptome	248	Y
F017187	Metagenome / Metatranscriptome	242	Y
F017859	Metagenome / Metatranscriptome	238	Y
F023670	Metagenome / Metatranscriptome	209	Y
F024591	Metagenome	205	Y
F025223	Metagenome / Metatranscriptome	202	Y
F029407	Metagenome / Metatranscriptome	188	Y
F031369	Metagenome / Metatranscriptome	182	Y
F036356	Metagenome / Metatranscriptome	170	Y
F044182	Metagenome / Metatranscriptome	155	Y
F046237	Metagenome / Metatranscriptome	151	Y
F053821	Metagenome / Metatranscriptome	140	Y
F059669	Metagenome	133	Y
F066208	Metagenome	127	N
F084509	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247669_1000002100	F000188	GGAGG	MSVKPEMAFDVCWEVYRGAREVMESKRGVAALNMEMETKYSWRPDVRPKMKDWVADFALAGEAALGGPEWASRMVLFRLYYLGLAPYERARHFLGLSERGWVNWSEEIRRRCGTEILRRGMFPPRKYFSGEE
Ga0247669_1000002109	F015120	AGAAGG	VLALLRRVFQTRYVGMLEGEVARLRMENRALMNSLLGTAGFPPVEFAETVKPVELPRMRRRSWQQIQRKNESEAARESRDDLLKQ
Ga0247669_1000002113	F000512	N/A	MIQVIRERHETPESVARRLCLAGGTNRYGEANYRAVWGWNRLGWIGGKFEDRDGRGDLIREVVELRWEPKYPQLNRWHVERWVPAEAYGSPRAWCAQTMECAGGRSVAALGPYPERGEYEHCFTLQGSRGEFVQLTPTIAEHVARAIEWARGRNPAAQRAKLYEREAREERAYEEWAFEVMDDGTPAFGGVPMVAVG
Ga0247669_1000002115	F000739	GAGG	MFAAGISGAAGGVMTGLAAVGIDPGHFNLQAGMGATVRIGAAAALINAVIGVAAYLQKSPLPGE
Ga0247669_1000002117	F006125	AGGGGG	MAITISLQPNNVDSSASNFVYAVATLTFSGNYVSGGDTLDFTQVASVLPSDTIVQVFGESQNGNGLNFYIPVAGTALSNWKLKCFVPAGTEVGAGAYPGTVTGDVVQLSITARKLL
Ga0247669_1000002119	F006229	AGGAG	MNKQSDVVSLVNISTQKWPPRHRTYFGSLTIQTPEAGASYAVTPVRACTSFMDLGDKRTMEIRLTAQEIAEDLVREINGDSGEGSYHGVFVAAGPEPTEEELAEARKKLDAFQQRLVDAADLEWERSHNMMFITDLERRAARELRLEKPWLYDPKPMADCPACGEKIRPGVAVCRTCGAILDREKAAKFGLAEREEKGGEVARVTEKKPAREK
Ga0247669_1000002122	F084509	GAGG	MPSYGNVLPPVSVGFGDSATVIASTDVIFPAPYKSAQVALAPAFSSGKVRAAVEIVWSGAPGAISVQFQTADTDIDAAYINEGAAISNAVGNVSRAEFPDVVAKFARILIATLTNNVTATAKISS
Ga0247669_1000002123	F000781	GGA	MLTVAQLAPMKDRDPYLYETLVKIVSAVNAASANAGVDPANPSPAPPAIAALKVQAANGWFDLAITDPAVTRPGLFYFAESDVTPAFSAPRVYFLGASRNLYVQLGNQTLYWRAYSQYVGSLASAPVAFGSPATAVAGGGSSGPAPLPSSGSGALPNGLLRGGNGFGVVQGARVVKQTVL
Ga0247669_1000002126	F002853	GGAGG	MGRGAQGQTQSLTDNQLNQTNALNQQLLGQQQSVGNLVVPQFQSILNNPGFSAADKAGITGQSQGALASAFDSLQQSATNRAARTGNSAGFSELTDDLARQKGIAEGNLAQQNQLNFSNTAFQRQMAALQGLSGLFGVDSNLLGRTLGIPSELLNVRANASRNNGGFFSSLGSSLGGALGGVPGLFL
Ga0247669_1000002227	F024591	N/A	MSRRSRFLLIAMSTALGIAALGLISGICYDLYLVSVRHMQLENALGTSIAYNKVLGGFGILGIILFFAFLFSAIADKKQDKPR
Ga0247669_1000002238	F017859	AGGAG	MNRTQTETTAMDTSVAELALRELQDRIEASGLESSYAELVCDLCVGQVSLEKAFGEIHQKAMERMVELLDTRILEDEVALEACLDKIAKESERVAWNALEKGTEALREGLAILEGAESLGDGGYVN
Ga0247669_1000002281	F031369	GAGG	MEREEELRQERQALRLLCSNLIRATTRVELCGLLDSSLFQDELHRVAFEEIRAAGSVPAKRLREELPGRITNRGFPDFELLEFLGKDLASEGEIEQLFVSVLRLIQERHESDGEELEN
Ga0247669_1000002285	F025223	AGGAGG	MLILAKAALGIGATLAMAGAYVLHEGVIRVDVDEHREGGSHVHFWMPATVVSAGMHLAPKDQVNRVTEEARPFLPVLREVAKELEKYPNVELVDVTDARDHVRVAMVDGKLQIDAVSGDGDVVHLSVPARVLRDVADELEERAPGV
Ga0247669_1000002298	F016298	GGAG	MTERVGYAWKNFEDQQAIIRAADLKAGYLVTFLLFFGASTIPLGKEVLPKLRWVSTGEIAASGLYAASYLVFALGFVRALYLISHVLTPRIARHHARPADGRELLYYEHVVRYENSAAYYEAMARVSPEEMLRNVTDQVYELAMIVKAKVDSLRAFSQAFKITLVAWFISTAVGFWIMTWMK
Ga0247669_1000002299	F036356	GGAGG	MTGRSTGISVRNVISFFLCGLSFALLFANSAAAQVKAPQSAGVDNTKMGPYRALATLAFNSSQKGDYATAATLAKILERTWDKSEDYGGDTALSKTNKKLFDEVDKAMDQFVSLLVEHATAAPEAARLRAAYTNYLEKLKSAD
Ga0247669_100000233	F001909	N/A	MARLGTEERRRKGRLKLPRVVRVRPSEPGLTDFDEILPTQNAALDSVYFVSKNRRYKEGLRVFITFPYSDVPGSINQESLGKVVRIDELDHGRRGIAVQILMPLYLGAKDTLR
Ga0247669_1000002367	F017187	GGAGG	MQVSKRVLRKFLMVAGAGFLVLASAPKGRAQSDDVAGQYVCTEAHVAGKSVACTAPPLSLKSDGKFELQGREGQYLVSGNWVELNSTVLKSRAKREAGHKIVFRFTNSKGACVMIYERRVAEMGKTKLG
Ga0247669_100000238	F046237	AGGAG	MNNHFLGIGLVLAAAAALALPASFANSAFPKTASCPIEGGTAHSTGKTRKAMQSTCIDVEYKHKGTDYSDPRHPQKFNHLFWVTHCTD
Ga0247669_1000002395	F023670	GGAG	MSSNETKRAAQEFLAAQFTEAVQIEEDRLNAEAAVALAPKVWKRVAETFQAQCEAWNVITKTESLACKETILGDLRIRCAGRPDMITVHYDSRKLQVIVKNTARPEHEGDSTFFIQGYNGGTEADLSRNNQRANLEVVVLGELRVLAGIGRTAK
Ga0247669_1000002414	F066208	GGCGG	MLCFRQSMRGLSLANPRLVLVAALGNALVIAGFFAVYGWNTEGAGAATRGTARFAICFFLAGFAAPGIRKWVARYPDAADLIQAFVAAQMVHFCAVIALHTKFAAEPLHLGAPQIAAVLIGFSIVLGAGITATPNAQSTVVRRGHQELLYILWLILLIDYTKHPAAEFRLVAIVVVIALVLRHAPRRENRAAGGILSG
Ga0247669_100000244	F044182	AGGAG	MSTTGSQILFLGELPFWLKICQSILEAPSSSFQFSRAHSLSDAVRRLNAEQWHALLLDLSHPSAQELLAARKLHDGLDSLPIVALLPISDPQFHQAAAAAGAASTLLLADLNVASLQHALVTAINTETLRNSPRKVSPMSFPFEPNSSDRLPANKLDAISHAVNNLLCVINANADILTDQLDASHNATRSLTQIKKATKNASDLIRLLKTP
Ga0247669_1000002479	F029407	GGAG	MPQHLSTRIRVARLCALFLTVMTIFMLVVLPSFAGTKIVHRWVLTGEPMPRLKKILVIAVVENYLIRQHFEEEMERLLANAGVEGVQSHMVLPPRNELMEGELKQRIKESDLDAVLIIRPKAVRHEMEETVTGGFYMPPPGYYTFWPYWNMTYTQFSTTSSYMQENTVVSAEFNLYNTKDEKLLWSGETDTIYSKDFGKLGREYANALVRQLKKDKVIGKK
Ga0247669_100000259	F053821	N/A	MIFALTFLPRSNHNALVILRLSDEDSRRTSTARSSPISATTNKLSRNPFLYLLTLLYFLYLPIPASAQNFDKPVTNIDEEVTAFAYAPNGNVVFSVRRMFKTKKYDLQRDDIWLLESGGKRKRLLEGQKFSHEDKLFTYQVVSFTWSPNAHIIAVQLFTTTMDPDAGAREDAPALLLLDDSGRELHPNGKDPLVMQAQNPLWLRDNQTLVYLTNEDTPQDLFAMQYLNISSGPAGKAFEGRTFQGASRISGSNAAIAVERAPHFDGPARLQRLDLLSQDDKEVATLDAYSGGILVSPSGTRVAYFLDKEVLEIRDLTAPVRIARMRIGLGVLQWSTDESQLYLKRTLEKKSADLVTFRVPDLRAYAPHSEIPVLEPEPRMLLHGLTVREYSLSPDGRFLGVVLPGKRNLQIFSF
Ga0247669_100000298	F059669	GGAGG	VNTYRTQPPWEFLLTASRNTLQSYELSRLGHAANLRKEISSLLDQWLDENANAMVARWLIEQRERTVLSAEAQSASDQPSSEPAPANGHSVSDNLLADRLAHPNGSRRRA