NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247669_1000001

Scaffold Ga0247669_1000001


Overview

Basic Information
Taxon OID3300024182 Open in IMG/M
Scaffold IDGa0247669_1000001 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)813032
Total Scaffold Genes725 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)598 (82.48%)
Novel Protein Genes16 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)15 (93.75%)
Associated Families16

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000312Metagenome / Metatranscriptome1324Y
F000313Metagenome / Metatranscriptome1323Y
F000807Metagenome / Metatranscriptome883Y
F010795Metagenome / Metatranscriptome299Y
F017542Metagenome / Metatranscriptome240Y
F018220Metagenome / Metatranscriptome236Y
F021824Metagenome / Metatranscriptome217Y
F023662Metagenome / Metatranscriptome209Y
F024035Metagenome / Metatranscriptome207Y
F030913Metagenome / Metatranscriptome184Y
F036396Metagenome / Metatranscriptome170Y
F036856Metagenome / Metatranscriptome169Y
F036945Metagenome / Metatranscriptome169Y
F038364Metagenome / Metatranscriptome166N
F066560Metagenome / Metatranscriptome126Y
F077658Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0247669_1000001181F066560AGGAMRKMKPLETFSEDNTPLVVRGSLPRVFLGLGIFMEAGLLFCGSYLLADAILQPLDAGTFSVLGGGLFLGLATVLLFYLAWPFRRRSILRRREPGQLSLEITLDPYEEKPQTLGQSGWAGDKKEGLLRPM
Ga0247669_1000001185F024035AGGAGMKKRILLCLAVVLMSCLTIAAQDAKMQPLTFWYEYTVNPGKDAQFMELVKTVGAPVRDKLLADGVILAWGVHVGLLRAPGNSTHIIWYSVADWSGIEKVDSAMRAQIGKLDEEAMKSGTAKKGSSGGATVTARMMEAADVSKTRDYITRDLVFVTGTGAPPAGVLPWTRYNYVKAKPGKGSDFRKVWEKYNKPVLDKLVADGTVLAYGLSVEEVKTDGDFTHYVWYATKDLASFEKVRAAYTADRDKRSQEEQDAITAEFLKTIELDASRSEVGRSIMFKVGGMK
Ga0247669_1000001213F021824AGGMPDQRHPIRAQRLNVWICVLLAALLLYNPFAAICFSHGTFEVHTLQRNRASVGASELQHFCPVQDGNQQVDLNLESDSEEVAVPAEGFVARGYEREVEVPQSDIVSKVWSRPPPLT
Ga0247669_1000001229F036945AGGAGGMWKRKCPLCFVRIPWTATLACSYEITCPACHAPLELSRFTRIFGGFGGIAGAFIALRLGQGFFHGWFWAMSVVLAILGYGIASALCVLIAGDLMVRPRSAAATFPHPTE
Ga0247669_1000001230F036396AGCAGMASFAQFLGRKVTVQYRVGDVLLPASGTFAADSGRSIFLEQHVEQRGKRSYFRWEIPYQYIHKIEEIEEIPEPPGTPKIAPPEPENAQASAASAGHGLASSSAPSLLSLPQRPKTV
Ga0247669_1000001309F023662GGAGGMRFRTAISLATFFMVCFAISLWSVPLPTAVGPLRAFPEPSSVAGTIANVHPSQFTLSLNRNLNPNKFEFVIDSNTQIEGKLAVGARATVDYRADGQQLIATRVVVQPASGIQLY
Ga0247669_1000001313F077658GGAGGMIRRTSLLPLFCAFLPALCCAQSGPEATPPAASQPATPAANVQTTPPAGKTDKTKKVWTNDEVKTLHGTVSVVGTNRPGERQPQSAMYGTGAAGDQRRGKILQYRAAIGELRKKIDAADQRISQLKNFKAEDSSPSGGINPNRGYNMIPLDEQVKQLEAKKKQWLGNIDDVENQAKKEGIEPGDLR
Ga0247669_1000001536F017542GGAMLVSLLGFALAGCKVKPKIDYTGLDQSGMWSTNLAQVKKMNVSPAEVGELTKLKQAGAGDDLCISLLKAARDHNHEFSSGDSVISLSSAGYTDAQILEMARADKIDTLSSDAVMLKLIGLSNPTVQIVIQRREQGSPTLTSAQIGRLKNIGESEKKILEVIYQGMTNQQAETYVARLEAARNHSHTEFVRNRGRRAR
Ga0247669_100000155F018220AGGAGGMQKVFRCTRCQRGMRIVGSTGLGKHVARTAICPYCKKKNKITWPRGDEFNVQRVGSR
Ga0247669_1000001579F038364AGGMDQKTQVDMPQPQISEAKLRKAFDEVSYSFEKILGEVRGDSNLALAKQAVNQLQISLNQFENLLKEGGVTVGSCDSIKYLYQEIEHPLSELRRYFIKEPSEILTDKAAVVYVNALKASFRRLMDIAEEMDQGRSSIPKSAL
Ga0247669_1000001590F000807GGAGGMPCKSCGSVNQNKFRGEMGIHFTGLKNIDKPVVWVFPELVVCLDCGTAEFAVPKAELRLLAKGDAAAAG
Ga0247669_1000001600F010795GGAGGVSGGFAERADDIVRAVKLLRRRGVAVGFPMQTADGEIIFAVGKDSTLTADQILGLLERGELHAEGVRRSVEKQAKGSN
Ga0247669_1000001615F030913GGAGGMEALRALDTAVKLDPARSDLHSARARALRAAGERNQARLEFQNALNLDPTSQEARAGLISLRPEPKHELRFGQDNDLFNFASANHDEWTSLASQWTPHWATSMAGSFYQRGGVDAGKFVGSVTLRQSPWGALTVGGGIGDDNAVIPKSEAFFDLDHGWKAGETTFVHSVETIYGQHWYWYQSSRILTLTGTAIAYLPREWTLSLGATGARSVFSGTQPEWRPSGIVRLGFPLANWGSQRLSGNLFYAAGTEDFGQVDQIGRFSSQTYGGGFRIQLTARQDLAGYGSYQKRTQDRTDTSFGLNYGIHF
Ga0247669_1000001637F000313N/AMKIIEQWLLYKHVGGQFTPLSKPFKTKAAAEKARLKYPERERGAIGVGVIRIKN
Ga0247669_1000001673F000312AGGAMNRSLLIILIPALLVAIGYVVVLRMMGFSPGYPRLIGAMVLFFAGLYWLSRRSGKKAKTG
Ga0247669_1000001715F036856GGGGGMFVLLFVVSVILAFGLAFGVSLIFRRMTQSVLSRYLADNVTQATAKYLQIAILLAGVSGGARIQMLKDYVNTPAYNGEALQAQMTTGLWSLAMYNTATDALLGILWLMIVFAFLAVVAVAFIRRSKIRWLLPERQEIRGSWSK
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