NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247693_1002447

Scaffold Ga0247693_1002447


Overview

Basic Information
Taxon OID3300024181 Open in IMG/M
Scaffold IDGa0247693_1002447 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK34
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2162
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037325Metagenome168Y
F095722Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0247693_10024472F037325AGGAGVHMKPLLAAIAVVMAGVGASVARADAPPQELAGTPFYFAANCTGLGDVIVWNQSLAHTGAVRVVGSQTVIVLGKPGIEAHANGECTFTGGGFSPGTIEPFDEPFTLPVHIAGA
Ga0247693_10024473F095722AGGVLVAAAALAPVAAASWSTHTPQTPPQRVVVRTELVPASDGFDWLDAAAGFGLALASVAVVLLLVAGHRNGGQKASDRKDT

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