NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228668_1001133

Scaffold Ga0228668_1001133


Overview

Basic Information
Taxon OID3300024180 Open in IMG/M
Scaffold IDGa0228668_1001133 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 82D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9338
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (28.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001728Metagenome / Metatranscriptome645Y
F010473Metagenome / Metatranscriptome303Y
F030399Metagenome / Metatranscriptome185N
F032988Metagenome / Metatranscriptome178N

Sequences

Protein IDFamilyRBSSequence
Ga0228668_100113311F030399AGTAGMSLKKKHTTKERFKIIESAITSIYVATNKLNRKVEELEKQLETLIPKENE
Ga0228668_100113312F001728N/AMNNFELRPTDKKDHYRFFINGVDVTGEQERSTFRHIIQVIDNNITTGL
Ga0228668_10011335F032988GAGMEKKNLAAELNKIAEEFKVRLQRGARLDKTVATGKFANSFNAKVKDDSIEITSDAKYAKYVVDGSLPSNSNVGWEKKKKNIESWIKAKGIRPYRKLKSGYKFAKTSTLKDSAYKSAVFAIMQSTSQRGTIKRFGYKGSNLFERVYKEIEDKIGVEITEAYAEDLRIELRKIINISNE
Ga0228668_10011338F010473N/AMKLVRYEVKVGFFKGLLLGVRHYPFESEEVYEEDIVFYLGIIQLVITRIYQKN
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