Scaffold Ga0228668_1000885

Overview

Basic Information

• Taxon OID: 3300024180
• Scaffold ID: Ga0228668_1000885
• Source Dataset Name: Seawater microbial communities from Monterey Bay, California, United States - 82D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10919
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001217	Metagenome / Metatranscriptome	745	Y
F045763	Metagenome / Metatranscriptome	152	Y
F091889	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0228668_100088519	F001217	N/A	MSKTKFNGFEKYFIQTALKNAIEEAEEDIKRLIDEGKRPIYAPGYFTMVGNEIIDKVNDMTLKKYQDE
Ga0228668_100088529	F091889	N/A	MRERAIKRIQNLTNKYSRQELEAIKDTLELVALSYDIEKVLE
Ga0228668_100088530	F045763	AGTAG	MRSLFHWSEETINYFKFISCYLSKEKTIDKIKLFVEVDCIPSGEETEDMLVEDLTNRIFQCENEQ