Scaffold Ga0228668_1000074

Overview

Basic Information

• Taxon OID: 3300024180
• Scaffold ID: Ga0228668_1000074
• Source Dataset Name: Seawater microbial communities from Monterey Bay, California, United States - 82D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 53984
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 61 (85.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004646	Metagenome / Metatranscriptome	429	Y
F015716	Metagenome / Metatranscriptome	252	Y
F025259	Metagenome / Metatranscriptome	202	Y
F039591	Metagenome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0228668_100007438	F004646	AGGAG	MIYAIADVPHEDYDNYDMLNKLFHALSPHGWKNSTWKNDTCPSLQKEELHGNTCRIFVDYINPDRREDKRWSLLSYTVEDAEGYLVLQDQFDDVDELIIYLTEEVKQ
Ga0228668_100007447	F025259	AGGAG	MIASKAIKVYASVGQPDGEYVTTVFSADDAIKVRAKLLKRTGIRRVIFKTVKEKELASYTNNEVHQL
Ga0228668_100007451	F039591	AGGAGG	MKLIFLLIWFDAVPEQGVRYHHLGTFDNETMCMTELRIASVLVNNKQETLECIGVRIND
Ga0228668_100007456	F015716	GGAG	MSDEGLYFLIGSLSIYVLAVPLLYHMVEPEDPEENNSGPIKFALMWPLVALEVIYRIIVGENNNDGTGSY