Scaffold Ga0247694_1000356

Overview

Basic Information

• Taxon OID: 3300024178
• Scaffold ID: Ga0247694_1000356
• Source Dataset Name: Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK35
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10848
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 40.4449
  • Long. (^o): -87.0297

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000806	Metagenome / Metatranscriptome	883	Y
F026416	Metagenome / Metatranscriptome	198	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247694_10003566	F026416	AGGA	MRTGRWLTWIGSVVLFLTGLGHGAKFSQLQGMIQASNIKAPLDGIVRGCWLVFSGEMVALAVIAVVASGMERGGRIVLICAAAMILDGALLFRFLGPFIGVYVTLAVAILFLAGGWMQAKAAG
Ga0247694_10003569	F000806	AGGAG	MLKKQLTLLFALVLSFSLAAAVFAQKAPAKPKAGRWEGRIVNSNKADSSLTIRKAGSSLEKTVKYDSSTKWVSQYHADKKVNDITAEDVKDEDYVICTGTWENAGVLHATLISKRLSHSN