Scaffold Ga0247686_1000033

Overview

Basic Information

• Taxon OID: 3300024177
• Scaffold ID: Ga0247686_1000033
• Source Dataset Name: Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK27
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29557
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (61.29%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 40.4449
  • Long. (^o): -87.0297

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008640	Metagenome	330	Y
F049747	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247686_10000332	F049747	GGAGG	VELRARVPRYQRDMLRELARREGTPVDAVLTRELEGVASAHAEELAGVPGLAMAMRWPETEVTG
Ga0247686_10000334	F008640	AGGAG	MDESTRSRIRHIFLSPRPNFALMTAADLLGFTLKELKREIEDGAIVAVWTALGERMTREELVAVAMQTLEQSVIEDALGKDAPSVLPEAIRLVELRARVPRYQRDVLRALARREGTSVDAVLTRELEDVVSAHAEELAGVPGLAMAMRWPETDLGLDRRVAPRAQPSPE