Scaffold Ga0228600_1003936

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0228600_1003936

Scaffold Ga0228600_1003936

Overview

Basic Information
Taxon OID	3300024123 Open in IMG/M
Scaffold ID	Ga0228600_1003936 Open in IMG/M
Source Dataset Name	Spruce roots microbial communities from Bohemian Forest, Czech Republic - CRU5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1079
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Roots → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location Name	Czech Republic: South Bohemian Region
Coordinates	Lat. (^o)	49.0448	Long. (^o)	13.618	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F102015	Metagenome / Metatranscriptome	102	Y
F106053	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0228600_10039362	F102015	GGTGG	MTGNEDLRFADDDPEYATDAAAEIDVEAAALEEADPQSVPPDIGDSGTAEPPGGKG
Ga0228600_10039363	F106053	AGGGGG	MPSASGLSRDQRIRCRDRVVQAARLTLANKAHTHYTEGAQRWDGVTNRRDAAIGQFPEYSDCSSFATWCLWNGLVLRFGLGDVVNGAGWTGGYTGTMLLHGLPVRYPSNALPGDCVIYGSGPPGVHCAVVVDIVNGIPMVISHGSEPGPFYLAYDYRSDVLQIRRYI

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