Scaffold Ga0255039_10104381

Overview

Basic Information

• Taxon OID: 3300024062
• Scaffold ID: Ga0255039_10104381
• Source Dataset Name: Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 1133
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 49.2166667
  • Long. (^o): -123.5333333
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032867	Metagenome / Metatranscriptome	179	Y
F042853	Metagenome / Metatranscriptome	157	N
F054777	Metagenome / Metatranscriptome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255039_101043811	F032867	AGGAGG	MDEFRKIVDDLIDNHYRRQYLIGTEVDESEYLSDIEEEDDE
Ga0255039_101043812	F042853	AGGAGG	MTRRTEGTYLIEVERHYIATIEVDAESEAQAIRYAGSDENQHIANRNEDYFYNFQDLLHSSEVVRFEGIEED
Ga0255039_101043813	F054777	AGGAGG	MTNKTNDETLERLYEDVVADDEAGLIDDVINNVAYLNGLHADDDRDEILQLIAEEEFYTQFT