NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255039_10000060

Scaffold Ga0255039_10000060


Overview

Basic Information
Taxon OID3300024062 Open in IMG/M
Scaffold IDGa0255039_10000060 Open in IMG/M
Source Dataset NameSeawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)33484
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (18.52%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)49.2166667Long. (o)-123.5333333Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034990Metagenome / Metatranscriptome173Y
F060933Metagenome / Metatranscriptome132N
F061811Metagenome131N
F064578Metagenome128N
F091643Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0255039_1000006011F060933N/AMDKVIISAILLIQAFQTESFKSKLIDVCLTISTGMGVYFTIPFQISTNFYAQEIFRSITSIVTAITILVISLFIRRWWSKRFK
Ga0255039_1000006022F064578N/AMTQAKEQAWIQGIEDGTFQGDAAKIYNMIQDNHVMTLPEISLAMDKRFNQFSGRISELLDAGLIKELKGDKYSLFRITQSDQEKYECSKMRHNEKIEKLRKKADELGYFLVKKMW
Ga0255039_1000006023F091643N/AMKAGSKVKVYLGNVACCYGIATGRAKKVGDNIIHEVKEAEPFETGDADYFRDHNQVSFDIKFAKEIKTFNNDKRVYLNTGTFNYYKMKKECFKYEQKTLF
Ga0255039_1000006032F061811N/AMDIQKLTDKELSTLIKECREELQDRKNNLDNVLLIDDLQIYKSKYARLTLFYDFCKSVYSISEKELKQKNQSKKKKNIRNAVINYLLTQGFSHQDVVDEFKMARTSLSSPISYHEKYYKLDKNYTDIFEDVKQFFED
Ga0255039_1000006040F034990GAGMKAYNVKYGTKVIVIDNEITTPPSSILISKGDEITIHNVDGMYCNGVDKDGNRIYIASWTEVEPYC
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