Scaffold Ga0255040_10092535

Overview

Basic Information

• Taxon OID: 3300024059
• Scaffold ID: Ga0255040_10092535
• Source Dataset Name: Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 1169
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 49.2166667
  • Long. (^o): -123.5333333
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004952	Metagenome	417	Y
F054773	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255040_100925351	F054773	AGGA	MTKQENIISIVSEAVEKAWEGSGSAKEASEKYLAMLQKDDVLREEATRRHLERIAYLDVVAQPRGYRARLKRAAHQTVLSKGETSTPAVSLKNMAPAYAKDMFERWLLPNTGICLGDATSEDLEQAIMHETSRSKHHEGQRSFYSAIKARVTDDKVVRDVWNISEVKAEYEQALVE
Ga0255040_100925353	F004952	N/A	LQQAHANLDDICKGIIVQNAIEENRERTPWVAAYVQERRPARDVLGLATDAPAEAAQAPTEEPEPIDWADVQRKIIAFLQSADVTYCETADIADVVGVETRKLSQHLDNMHARGEICKAHVNQRANQQRASLVLWSINADVYK