 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300024059 Open in IMG/M |
| Scaffold ID | Ga0255040_10004951 Open in IMG/M |
| Source Dataset Name | Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Restricted |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4223 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (83.33%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: British Columbia | |||||||
| Coordinates | Lat. (o) | 49.2166667 | Long. (o) | -123.5333333 | Alt. (m) | Depth (m) | 200 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004952 | Metagenome | 417 | Y |
| F005843 | Metagenome / Metatranscriptome | 388 | Y |
| F009460 | Metagenome / Metatranscriptome | 317 | N |
| F020173 | Metagenome | 225 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0255040_1000495110 | F004952 | AGGAG | MNLTHTHEFLITHITDSGTGFAVRTDNGESVHISPRLLQQAHANLDDICKGIIVQNAVEEQRERTPWVAAYVQERRAARDVLGLATDVPAEAVQAPTKEPEQVDWADVQRKILSMLQSDEVTYCETADIADVVGVETRKLSQHLDNMHARGEICRAHVNQRAGQQRATLVLWSINADVYK |
| Ga0255040_100049513 | F009460 | AGGAG | MAKWDLSKLENSASVGAYIDEDSSTPTQPTPQMIIMSIRRKADIMRMDAARKPERRTMKQRAEEIISLCDMLERRL |
| Ga0255040_100049514 | F005843 | AGGAG | MTLAEPVFMAFVIFSSPDECKAFAKYYDLARIFEPQCVEMGGEADYRRPFPDVRPQPRPTQENNNG |
| Ga0255040_100049519 | F020173 | GGA | MICTTCDGTGFIELPRFVNTPDSDPWTTVRCPECQDEDDFDWRNEEEEE |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |