Scaffold Ga0255040_10000412

Overview

Basic Information

• Taxon OID: 3300024059
• Scaffold ID: Ga0255040_10000412
• Source Dataset Name: Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 11154
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 49.2166667
  • Long. (^o): -123.5333333
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022459	Metagenome / Metatranscriptome	214	Y
F032273	Metagenome / Metatranscriptome	180	Y
F053637	Metagenome / Metatranscriptome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255040_100004125	F053637	AGGGGG	MSNENDITLDPEWISEQVNRLAGWEYLNRYVRHELDEPMLPQELCDKIGVHKGYIHEMTKSIRKKLNAK
Ga0255040_100004128	F032273	N/A	MSTKGSGPRKGHNAAKQRKNYDDIDWSKKPAVQKIHKSQKLK
Ga0255040_100004129	F022459	AGAAG	MSKHLEALNEWQIATDHWIALTLEKYKEYERANLTQVFMRGPFAGWSERMVLELAMKMDDANKKVPRHKIDEH