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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300024059 Open in IMG/M |
| Scaffold ID | Ga0255040_10000258 Open in IMG/M |
| Source Dataset Name | Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Restricted |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 13248 |
| Total Scaffold Genes | 24 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (91.67%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: British Columbia | |||||||
| Coordinates | Lat. (o) | 49.2166667 | Long. (o) | -123.5333333 | Alt. (m) | Depth (m) | 200 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003051 | Metagenome / Metatranscriptome | 510 | Y |
| F010532 | Metagenome | 302 | N |
| F028971 | Metagenome / Metatranscriptome | 190 | Y |
| F078570 | Metagenome | 116 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0255040_1000025816 | F028971 | GAGG | MIITKDTELTPMTKEEFRAWEDYVIKYNHDNNTDQIAYEVVWNKDEYKVKLLDLRVDKEGQE |
| Ga0255040_1000025818 | F003051 | GAGG | MKTKILKSKVVIDMSVSEYDTLFKYINKLSNMLSTLHETNDLWLSDVHNLDSLQYDLVKLLDAKWDAGSYRYVKRGSK |
| Ga0255040_1000025821 | F010532 | GGAGG | MNRTLYKKLEDICAREYILNKLSSSKFRTFVDFLYDDIRTWDKPMEVSDVDVIHRIEEHMSYMVSSYLTKSYEGISVD |
| Ga0255040_1000025822 | F078570 | GGAGG | MSDEHVILEGKVMWAFLDKPNHFDYYGLFLIPNKKSLQVVKENNFYNFKEERGHVSLQNKELDFSIYDKENNLIMNLDYYLGNNSHIKVRCKSFISKMVNQKCLYLESLKILKHVKIKSDINWEVK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |