Scaffold Ga0255040_10000014

Overview

Basic Information

• Taxon OID: 3300024059
• Scaffold ID: Ga0255040_10000014
• Source Dataset Name: Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 36897
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (72.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 49.2166667
  • Long. (^o): -123.5333333
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010392	Metagenome / Metatranscriptome	304	Y
F025510	Metagenome / Metatranscriptome	201	N
F083372	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255040_1000001439	F010392	N/A	MVKENKTESVEEPTIKFADDGVEHKVNDMPDEAKQLMARWQEKKQIRDEFIIKANNDIDDLNILLSSYEARMKNIVEPVEDEPKIEVQ
Ga0255040_100000144	F025510	AGGA	MKYIKKFWVWLKETIHKFLNWFDSFMTPAPVVKKRGRPRKK
Ga0255040_1000001449	F083372	AGGAG	MIMQQYKISYPRAEFCYAKHIRDNLKHEGEIIYPHQPSCRLLEDGSWLLLTITGERLGTVSPNGTVRLT