Basic Information | |
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Taxon OID | 3300024058 Open in IMG/M |
Scaffold ID | Ga0209997_10355478 Open in IMG/M |
Source Dataset Name | Deep subsurface microbial communities from Mariana Trench to uncover new lineages of life (NeLLi) - CR04 metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 720 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli) |
Source Dataset Sampling Location | ||||||||
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Location Name | Mariana Trench | |||||||
Coordinates | Lat. (o) | 12.4764 | Long. (o) | 144.8648 | Alt. (m) | Depth (m) | 7939 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F071263 | Metagenome | 122 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209997_103554781 | F071263 | AGGA | MDRLRDLCELARDVNETPESLIRFGASGELSIFVIADDWAVRSGDDTVDIVRGRMFLAPEDLLQSLNAQCTRVCKVRRPKDDAILTLEVPVEVNRGIHFVTADEAERFCREHALTLKSTGDTPPYLNPNHDFYSEELAIAVRAWGALFADGSFEKGYKTPRQHIERWLRAGKFDLDENAEQRIATLVNP |
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