NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209997_10061591

Scaffold Ga0209997_10061591


Overview

Basic Information
Taxon OID3300024058 Open in IMG/M
Scaffold IDGa0209997_10061591 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Mariana Trench to uncover new lineages of life (NeLLi) - CR04 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1684
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium ADurb.Bin412(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameMariana Trench
CoordinatesLat. (o)12.4764Long. (o)144.8648Alt. (m)Depth (m)7939
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035771Metagenome / Metatranscriptome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0209997_100615911F035771N/AIENGRQRRSPHFAVLTYSMHAPRVKIAVALLDGPF

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