NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255051_10002491

Scaffold Ga0255051_10002491


Overview

Basic Information
Taxon OID3300024057 Open in IMG/M
Scaffold IDGa0255051_10002491 Open in IMG/M
Source Dataset NameSeawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_9
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)6565
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (72.22%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)50.0528611Long. (o)-123.8211389Alt. (m)Depth (m)425
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001227Metagenome742Y
F035271Metagenome172Y
F036920Metagenome169N

Sequences

Protein IDFamilyRBSSequence
Ga0255051_1000249116F001227AGGAMAARRGPKRTARRKRSFSINLLETGAGLAFLDAANAGTAAQSFIKGDLKGGLDTLSNAFKTNKQDMIKIGAGTLAAKLVLGSLGGSKVLGAIGPLKLRA
Ga0255051_1000249117F036920AGGAGMGRPRKSVRPASFSIDAKMYKLLQELSDLEKKPMSHFVNMALYDYKPIRELDVYRDWWKCDQRDCAVLNPPANEECKECGQRSLQSIIKEHNDRMLKYK
Ga0255051_100024913F035271N/AMPYALIPDGYSLKKVTKLQKQAVSEKRRHDDVVTVLNNPEIVKQIIITGFAYLAVKEGKDALEDLKGLGVSISKDAEDAFTKKRSFGSPAATGVSFEQILEEGLKRLRLA
Ga0255051_100024918F001227GAGMTVCSSISSYSDMSKAGCSVGNAPTRTNMVARRGRKRMARRKRSFSVNLLETGAGLAFLDAANAGQAAQSFIKGDLKGGLDTLSSAFKTNKQDMIKIGAGTLAAKLVLGSLGGSKVLGAIGPLKLRA
Ga0255051_100024919F036920AGGCGGMGRPRKDVRPASFSIDAKMMKLLQDLSDLEKKPMSHFVNMALYDYKPIRELDVYRDWWKCDQRDCAVLNPPANEECKECGQRSLQSIIKEHNDRMLKYK
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