Scaffold Ga0257036_10312

Overview

Basic Information

• Taxon OID: 3300023718
• Scaffold ID: Ga0257036_10312
• Source Dataset Name: Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_156A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of California, Irvine
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 50899
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 59 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Gut → Child Gut Microbiome

Source Dataset Sampling Location

• Location Name: USA: Northridge, California
• Coordinates
  • Lat. (^o): 34.2381
  • Long. (^o): -118.5301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039147	Metagenome	164	N
F051935	Metagenome	143	N
F070133	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0257036_1031241	F070133	AGGAGG	MKRLLGLLMAVMVMMGGMAGAEASTDNASMQLIRMNPLAFRKEPVELYSVTHTPNGSFVVIYFTEGEKSELQEMWMELFDSVGTSLLSAKLGEFDPNGEKIPHGQIILKKDRFICEYYPDITSMEVCTQTVYRYTGKRIQKPTIKKLKFGAAPYAQHVGDYMVEKQAHSEDETPFRTVKITHIASGKSKKLMIYDWSFCACSDQDGNLLIAQQNEKGNLEIRSYNAAMQESIVELSGDFLQNENVRDAACIGQTAYMRIRLTNEKSEILLYDITQQKITDSQTLLAVDDNSYIAEIKAAGAVLLSVDGYWNRELQRQKYQINLLNEHFETSRLPLQHESCLYIFTDVEQADITTIEMDEKSHSYFVCSYSISAGE
Ga0257036_1031243	F051935	AGGAGG	MKRLLGLLMAVMVVMMGGISCAVAENTNPIVSDWLTELKSKRLIQIVEDEIGEGWTLYQPNGREEEENFSSAANLKEMRFLPVVAQKDNQLRLLILRRQGDLWKVSEQNDRALMREGWMLQNFSAMPYGNSDSTYIYFDFVDENQTEWELVLNLSTVYVSYFRMIYTAEEYGITEIVFNYERGVDFQFDAPFYFRLSYDVDPAKSLSFGVADFELATCPLSMREFLVPAVVSCGEEGAGLYIMAKQGIQPILVLADGEMIEAIPQKEKLDWTIVYYQGNYLFMKTENCKMEE
Ga0257036_1031255	F039147	AGGA	MRARRLLILLMMLLLLPQAQAERLTLYTRPNNVDEATPFQLRPTELSICSVTRAMGGVVVLANDYNYDSLSLYFWQDGMTEMRKLGGGFYWVMSGDTMETAQQSCEYSMSRVPNYRMPDLTHAISELTSDGETLYALNRINGLIFKISETKDGLQTEDICTMENLSCLNVSYRDLETDKIYTYPASLTRMHVCGSVLAISVMQENGIKVVLVDLTDGAIREIADESLEAMYEWADGELLLWRLEGSTNEISRSSGTYTLSRYSVATGEETLLSTGVPYKKRSECGAYDPYSGSYYDVRTRQIVRTTDFVQEEPVVTFPAANVNIAVTKDSIVGVNLSSVYVRSKENGDMTVLRIQSSNGASNTALQHFAEENPKVILAQETLAKSAVNAASLAARMSASADAPDILRLGLTPNTPEADGSWPLDVLMDKGWCMDLSVYPEVSDYVSRLNGIYRDAVTRDGKIYALPIYAWSYGYFISRNVMEKLGLQESDIPTNLIDLCAFITKWNDNLTGAYAAYTPLEETESYRERVFDLMVRDWIGYCQAENIPLRFDHPVFREMMAALDAMRTDKIEQANQQVNEEISDYRECLIWTDAQAVGNFANYADAFGSRIFLPMALTPDVTTHYGIGYMTVLVVNPRTTNADLVGKMLAQVIADQEATAKCVLLADYDEPIEDSYYLIMVRDYEKTLTELRRQQENAPVWKKQGIQERINEEEASLQRYTVRERWTIAPKTIELYQQTILPMSYLRRPGILADSDAFNALVSQVHQGGISLEEFVEKADKLIERLEQ