NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228684_1031096

Scaffold Ga0228684_1031096


Overview

Basic Information
Taxon OID3300023704 Open in IMG/M
Scaffold IDGa0228684_1031096 Open in IMG/M
Source Dataset NameMetatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 35R (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)820
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001740Metagenome / Metatranscriptome643Y
F004850Metagenome / Metatranscriptome421Y
F023317Metagenome / Metatranscriptome210Y

Sequences

Protein IDFamilyRBSSequence
Ga0228684_10310961F001740N/AMYNTNNPSNWSWSKAFAEMNKTVHEAEMTQQCINHVLNYPGEANGVFMSLNKTQQDDVYELLNQIL
Ga0228684_10310962F023317N/AMNNLNTTIDKIAMSEFAIHYYQLGDNEKQWCNDEMVNNPDWLNPFWKQEGYQSETDKLCEELGILNYKNNN
Ga0228684_10310963F004850N/AMIDNYEFEIYYGDIEEPLYLTNDKNYICDEMRDFMEELGIVMEEVIYKVQLITN
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Institute for Fundamental Biomedical Research
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