Scaffold Ga0228695_1001010

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0228695_1001010

Scaffold Ga0228695_1001010

Overview

Basic Information
Taxon OID	3300023699 Open in IMG/M
Scaffold ID	Ga0228695_1001010 Open in IMG/M
Source Dataset Name	Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 81R (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3351
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (22.22%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.8313	Long. (^o)	-121.9047	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013081	Metagenome / Metatranscriptome	274	N
F043091	Metagenome / Metatranscriptome	157	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0228695_10010103	F013081	AGGA	MDLIKIVKTIEPEYKNTDQCINALPNEVELQLDNEDYLIEVNLKEGVLETNFWQGEEKYNASDDDINYIYNYLEHHLLNKIEETKVYYNAHNYNYQIWN
Ga0228695_10010104	F043091	N/A	MELTEKKLEKISGAILSSFINLHLLEDAEKIGLFRQRVRNNIRRTISDLKEIEINYYNKIEEVDEKELGDKLTANKLIFLDWLLNKFDFNDFCKIQEVCLAYEADKERITQVTDEVLINSGAEQIDEQI

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