Scaffold Ga0228697_105761

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0228697_105761

Scaffold Ga0228697_105761

Overview

Basic Information
Taxon OID	3300023674 Open in IMG/M
Scaffold ID	Ga0228697_105761 Open in IMG/M
Source Dataset Name	Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 90R (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1157
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.8313	Long. (^o)	-121.9047	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F060770	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0228697_1057611	F060770	AGGA	MTNVNVFNSMMEFATTKIENFYKATNSSSPCYLEQVACIGWVASYEDPKWKQTGLSYEDAVKEFGLKNVKAKPNGCVNGDWLIEVKDGFTSDEKEFDTPKQAIAWLETKVPFSMKLAEFI

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