Scaffold Ga0247546_104724

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0247546_104724

Scaffold Ga0247546_104724

Overview

Basic Information
Taxon OID	3300023551 Open in IMG/M
Scaffold ID	Ga0247546_104724 Open in IMG/M
Source Dataset Name	Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic ? CSA4 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	561
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location Name	Czech Republic: South Bohemian Region
Coordinates	Lat. (^o)	49.0427	Long. (^o)	13.6161	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018468	Metagenome / Metatranscriptome	235	Y
F021600	Metagenome / Metatranscriptome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247546_1047241	F021600	AGGA	MSEGNKIAAALLACEASRQQQELGKAGPGKPLAERDVAAELWAYFQGFLVRLERDRGRVG
Ga0247546_1047242	F018468	AGG	MIIRLTIQQAGAGFRATISKREEESTGPVGQPEIFLVDSKEEAKKRAKDLARALGLKTYRVVDRTVAV

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