Scaffold Ga0247542_100727

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0247542_100727

Scaffold Ga0247542_100727

Overview

Basic Information
Taxon OID	3300023544 Open in IMG/M
Scaffold ID	Ga0247542_100727 Open in IMG/M
Source Dataset Name	Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic ? CSU4 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	977
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location Name	Czech Republic: South Bohemian Region
Coordinates	Lat. (^o)	49.0427	Long. (^o)	13.6161	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F055026	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247542_1007271	F055026	GGAGG	MDRMVRPESRVVLADERSVRVSAGAPGSRLQPSGEIRPREAECQKPLKERGANQRAAMLSERYSLVKLSAERRLGGPSHSCHGEGNRQHSVKPDGMLDLLGVSGGGTLGQSIAEQERPYLAAKSGKDRAYKAGRLKSRGAGRESEGSVIPVKACSKTRWREGTLLWSRRHGGKREGMPETANSLFVKARQLRCPAMDVRQVRSSAVDSGEGVYRRSDDSSKGPSLCARWRHARHIKKIIVKPCAGKPQARFERGLMETGWR

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