Scaffold Ga0257050_100331

Overview

Basic Information

• Taxon OID: 3300023540
• Scaffold ID: Ga0257050_100331
• Source Dataset Name: Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_51A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of California, Irvine
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41455
• Total Scaffold Genes: 91
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (52.75%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Gut → Child Gut Microbiome

Source Dataset Sampling Location

• Location Name: USA: Northridge, California
• Coordinates
  • Lat. (^o): 34.2381
  • Long. (^o): -118.5301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F076653	Metagenome	118	N
F078005	Metagenome	117	N
F078006	Metagenome	117	N
F083451	Metagenome	113	N
F085718	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0257050_10033126	F076653	AGG	MTIRDKYFGWKDIFFGRFVHCCNEKSDQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYGCEYAPIDISSVLQTLIRLTENAKFIFDDQPGIHDMIPYRGFFLRDDFSSGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDMNSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRKNKFKMTDKVKRGANNWYYSGGTISCVDSFLGKKYRKDLRTFIYRGIVFFLDRIWHTSLFDRMGVKMKYNAYYCYAATSGIWYDKGFKRRLAKRFNRSLSGGGELFGANLACMVCDRKDIDWEALRFWLEKYDDPTDKGMVNSPIQFMYLYLYYTFNK
Ga0257050_10033136	F083451	N/A	MIMDKNEREKQVLDLLMSRKDIRKLVEKSNECYSKMDFVGAMKCRQEIKDIVDRESKIMLTKSESLIGLMNNADNEYKFNMLVWLHSMMCMADVFNGILEDFKDGVRKANGNSKFVKFDNLDRLMTECKKEIDYLMKGTSKSFQISFAVRSDELREMIENMVGDNIREGYDMFKEEAKMTKETDRSKIEEFNKKLDHDQM
Ga0257050_10033156	F078005	GAGG	MVKTGDDGFEYGGKVIFYKEDDDNYEILVKNIEMSLIVEANTMASMDDRDFACLMGEVYKQKFTKAVTISEDEDDEDN
Ga0257050_10033180	F085718	AGGAG	MVIEFDFEIYKNGDYDKVYLRNGKEPRVLCDNGKGDRPIVVMVEDDNANDYIILRYNETGRRNINGQSSFDLMLSVKERKPELWVVVISYMDNKDKRQKMVLPNFFSRNIGGNIYLQGSSKSNVSYYVGRLEKDGCFDELCEKIRVKRDRIYNMEIISLSDDKATV
Ga0257050_10033182	F078006	AGGA	MLNQALAGRKEYHDRTCADMARGRFPAPWHNLNINDMGDNILRKAADELKKTGCRVFAWQDDTYNRGWSKGDYTMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSCGSGSGCCVKEEATFDLEAALDVLNGPLPRWCRSYGVYPKQYDNIDKWYNSDNHNKKLFKEI