NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247555_101973

Scaffold Ga0247555_101973


Overview

Basic Information
Taxon OID3300023539 Open in IMG/M
Scaffold IDGa0247555_101973 Open in IMG/M
Source Dataset NameMetatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZA5 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)664
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.0448Long. (o)13.618Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F091131Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0247555_1019732F091131GGGGGMGTPSLNSTTSSPAGLASVIEGAGPSSATDPLAGLDPILAAVAKRDRDAAEITADRLDAGQKFLDDFATACATEVRPAMDAVLERLRQLGGGGLVEEHPGGEARFRSPRLALWMSLKGEMVGEPRLDRFPYLLFEADVQGRKVQVDEGDMWRGAGGHTSGRVGAWQISDLTRQRVTEELLAIARRAAG
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