Scaffold Ga0257021_1083679

Overview

Basic Information

• Taxon OID: 3300023500
• Scaffold ID: Ga0257021_1083679
• Source Dataset Name: Marine microbial mat from Loihi Seamount, Hawaii, USA - Marker 39_BS4 Individual Assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Western Washington University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 749
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Marine → Marine Microbial Mats From Loihi Seamount, Hawaii, Usa

Source Dataset Sampling Location

• Location Name: Loihi Seamount, Hawaii, USA
• Coordinates
  • Lat. (^o): 18.902
  • Long. (^o): -155.257

Associated Families

Family	Category	Number of Sequences	3D Structure?
F081422	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0257021_10836792	F081422	GAG	MEGIYGKEVGTVTLTPAEMLIAGQLGLMRMVQNLRDNRQGKYGAPTDSQAWAINILGAMGEACVAKWGGLWWSGSLGDYKADDAGKLQVRTVDKENKRLILHDDDKDDRPYILVYAKPPNFIIKGWIMGADGKDKAYWADPQRTNRHAYFVPNDKLININELELSIWL