Scaffold Ga0257021_1073624

Overview

Basic Information

• Taxon OID: 3300023500
• Scaffold ID: Ga0257021_1073624
• Source Dataset Name: Marine microbial mat from Loihi Seamount, Hawaii, USA - Marker 39_BS4 Individual Assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Western Washington University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 800
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Marine → Marine Microbial Mats From Loihi Seamount, Hawaii, Usa

Source Dataset Sampling Location

• Location Name: Loihi Seamount, Hawaii, USA
• Coordinates
  • Lat. (^o): 18.902
  • Long. (^o): -155.257

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057674	Metagenome / Metatranscriptome	136	Y
F096051	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257021_10736241	F057674	N/A	DPVGVDQYGRPALGRGGGRCAWPFTGAIRRYKHVGGGIDRDGNRVVKPWELERAEIIDGLCQRYSCLPSQLMEEEATILSMLAIVQAGQPDESNG
Ga0257021_10736242	F096051	GGA	MANEVSFTITADPSSAEAGFKKVKTGFQSVKDSIVKNRKAIGLGMVAMGAGIETLAKKQQGLTENTRKLANATGMSEDEIRGMATSLSNATFPLDSALQLMTLGAQQGLESAESLKAYAGFWDTVGDATGLSAEALAKSGAALAAVGIEVGNESELLGAFGLISQESTQSVQE