Scaffold Ga0257053

Basic Information
Taxon OID	3300023490 Open in IMG/M
Scaffold ID	Ga0257053_100137 Open in IMG/M
Source Dataset Name	Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_70C
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of California, Irvine
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023490 Open in IMG/M

Scaffold ID

Ga0257053_100137 Open in IMG/M

Source Dataset Name

Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_70C

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of California, Irvine

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	84612
Total Scaffold Genes	112 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (21.43%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

84612

Total Scaffold Genes

112 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

24 (21.43%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Gut → Child Gut Microbiome

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Gut → Child Gut Microbiome

Source Dataset Sampling Location
Location Name	USA: Northridge, California
Coordinates	Lat. (^o)	34.2381	Long. (^o)	-118.5301	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Northridge, California

Coordinates

Lat. (^o)

34.2381

Long. (^o)

-118.5301

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F064817	Metagenome	128	N
F080163	Metagenome	115	N
F101357	Metagenome / Metatranscriptome	102	N
F105375	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0257053_10013738	F064817	N/A	MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDNPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEECRRICIQNIIERNINQENQDENETI
Ga0257053_10013740	F105375	N/A	MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILNYSNNLMNLLVNAHVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVNFAMNFTDGEANIKSINRISSNIMQITFTV
Ga0257053_10013743	F101357	AGG	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSESDIQEYNEWLNANQYKLYPLLLDILKISLKDNFYDYSNASNIHYEGGKFPSMLTIQLFNLEF
Ga0257053_10013749	F044555	N/A	MKTTKPLSRITISQNGNQILTCKVYKEPNYILSMSNKEILELISGLDYMGNIPTVPDLEKPIEIQVSTTQQIPLEQNKEVQTKIKEIIYNNLHDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR
Ga0257053_10013752	F080163	N/A	MKTIKFLQESFETKERFQQEISFKYSYNRDTVESIDFRINQRNIRYFYEAMQNFENSLVNEFKEKKNNFCNAKQFLESINDFDKILFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYTHRDLSFSTKLESEILDSEIELLQEKLDLIREEICKLIGVNPNLEKQGHEDNYIFNLNIDSDNQIGFFLQETEL
Ga0257053_10013753	F032312	N/A	MPKIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALHDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0257053_100137

Overview

Ecosystem & Geography

Associated Families

Sequences