Scaffold Ga0257022_1065144

Overview

Basic Information

• Taxon OID: 3300023481
• Scaffold ID: Ga0257022_1065144
• Source Dataset Name: Marine microbial mat from Loihi Seamount, Hawaii, USA - Ku'kulu Base Individual Assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Western Washington University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 618
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-KM21-C338 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Marine → Marine Microbial Mats From Loihi Seamount, Hawaii, Usa

Source Dataset Sampling Location

• Location Name: Loihi Seamount, Hawaii, USA
• Coordinates
  • Lat. (^o): 18.903
  • Long. (^o): -155.257

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032041	Metagenome	181	Y
F043615	Metagenome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257022_10651441	F043615	N/A	LKEKEEMMTEQVYGERTRWNHRYSEFEQGTLVRQRNGTWRITISRVCGGNNCGPRNGVAHDHRATNTMSEQEAVNLLLDWDHDLEEAKGLSNYV
Ga0257022_10651442	F032041	GGAGG	METKLTYTVEAINRPYGASQSIPWGDAVRTEGLTERKAIKTYNDINRWYHPQGGDGYSGHVRIVGSDDWTYTVEPPAPGERATLQAMYHLDDL