Scaffold Ga0257022_1017264

Overview

Basic Information

• Taxon OID: 3300023481
• Scaffold ID: Ga0257022_1017264
• Source Dataset Name: Marine microbial mat from Loihi Seamount, Hawaii, USA - Ku'kulu Base Individual Assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Western Washington University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1374
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Marine → Marine Microbial Mats From Loihi Seamount, Hawaii, Usa

Source Dataset Sampling Location

• Location Name: Loihi Seamount, Hawaii, USA
• Coordinates
  • Lat. (^o): 18.903
  • Long. (^o): -155.257

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054918	Metagenome	139	Y
F057670	Metagenome	136	N
F090609	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0257022_10172643	F054918	AGGGGG	MPIDWEQLKPQMTDLALEHICRRCKRIIPGRDYRIAGEDGNYHIQCYEEMQQEP
Ga0257022_10172644	F090609	GGGGG	MSTATSLLLYRRLLDGLLNRLDESEPPSSEYKEGSDRPQWLRVTDYAWLVETLKTLTEADPGFRQILAELKPKTCEGCTLTFTPHRPEQIYHDAYCRARVNSRMTYHRQKGESDADRLGTTETSDD
Ga0257022_10172645	F057670	AGGAG	MTTENQQPQSRVRYRININRLAKGQLSFDCTVELEGPVELIGADHDFPSRIALGKLQEAALEESDKLVAALQAKYPMGVE