Scaffold Ga0257022_1008960

Overview

Basic Information

• Taxon OID: 3300023481
• Scaffold ID: Ga0257022_1008960
• Source Dataset Name: Marine microbial mat from Loihi Seamount, Hawaii, USA - Ku'kulu Base Individual Assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Western Washington University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1988
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Marine → Marine Microbial Mats From Loihi Seamount, Hawaii, Usa

Source Dataset Sampling Location

• Location Name: Loihi Seamount, Hawaii, USA
• Coordinates
  • Lat. (^o): 18.903
  • Long. (^o): -155.257

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003827	Metagenome / Metatranscriptome	466	Y
F017842	Metagenome / Metatranscriptome	238	Y
F021121	Metagenome	220	Y
F037766	Metagenome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257022_10089601	F017842	GGA	MPTYVMKDPEGVEHEFICSISEMEAKKKEGWRTVFSPPKNSLIGHTGDVLSHTSEDWNSVLKRIKRSHPLG
Ga0257022_10089604	F003827	N/A	MPEGRWADWQVRQIAENMATKRPKRDWFDGDGHQEGYLTSLKSWSHITARQLYSMELEERQLIIFIHHLGIEHVGVQTFDPQDTRTHSDYVPSEGDKMNTPPLDIQPK
Ga0257022_10089605	F037766	AGGAG	MGSKRATLEILDPGEKIFGSPTDGKYFVQEFEDDEPRGGQFFKTIQEAEKHMVEYETGNEADTKVLLQENA
Ga0257022_10089606	F021121	AGGAG	MADFEMYTDETCEEAIKNFQERLKEADNLKKDKNGNLDFESCWKAMRKEGPMILNVTKHLFSLHINRHHRREGNGK