Scaffold Ga0256747_1313510

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0256747_1313510

Scaffold Ga0256747_1313510

Overview

Basic Information
Taxon OID	3300023444 Open in IMG/M
Scaffold ID	Ga0256747_1313510 Open in IMG/M
Source Dataset Name	Hydrothermal Fe-rich mat microbial community from Loihi Seamount, Hawaii, USA - 675-SC9
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Delaware
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	713
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Fe-Rich Mat → Hydrothermal Fe-Rich Mat Reference Genomes

Source Dataset Sampling Location
Location Name	USA: Loihi Seamount, Hawaii
Coordinates	Lat. (^o)	18.906379	Long. (^o)	-155.256927	Alt. (m)		Depth (m)	1299.98
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029897	Metagenome / Metatranscriptome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256747_13135102	F029897	AGG	MTQEMRKVVLETVIPSKFKYVARDLDGSIHVFENEPNLDYGTNKSPVPCDMWDVYEGETMQLSSKTPVSAGLLTEELGDWRDSCKELTELARKDTDDNQ

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