NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222680_1022631

Scaffold Ga0222680_1022631


Overview

Basic Information
Taxon OID3300023434 Open in IMG/M
Scaffold IDGa0222680_1022631 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #1004
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1226
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)19
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013816Metagenome268Y
F077173Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0222680_10226311F013816N/AYDTLDFVQDKNLASLLKGEYKHALLKLLLDAGHNYTKHNRLIIPDEFEEAIVQTLESNDEVKMWFQDNCEYGDEFKCSKKELEDSISKPFREIQTEIQRITNLKYNRGLTFGKTLRGGWKGFRIKIIVEVA
Ga0222680_10226313F077173N/ALLIFHDQECSLLNAIWMYDTIKSMIDDTNNVIKYSDINKKTRIYKTAKSFFRILKINQEDTNLYFK

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