Scaffold Ga0256681_12367181

Overview

Basic Information

• Taxon OID: 3300023311
• Scaffold ID: Ga0256681_12367181
• Source Dataset Name: Combined Assembly of Gp0281739, Gp0281740, Gp0281741
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Laval University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1476
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location

• Location Name: SAS2a, Kuujjuarapick, Canada
• Coordinates
  • Lat. (^o): 55.1491
  • Long. (^o): -77.4866

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010759	Metagenome	299	Y
F017591	Metagenome	239	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256681_123671812	F017591	GGAG	MSSQIANADALVAYVEQFTGSSNDAEIKQCIYLTELMLRNIELPALRTNPYTTTGIADTNGYVPIPPDMNKPILFFNQGGSTGGGPWIVYDRIGDRDMITDQLIENLYLKPLNIPQVYRGKFSEVGQNYEFLPGLGQGSVINMYYYTTWPFLFASDSNGGTVQNNVVLQSFPEGYVYGTLHNYYLKRKMPDDAAGWLTKFNDAWNTIEDQNNKGKWSGGHNKLTSIFQPRKDTRYSTR
Ga0256681_123671813	F010759	N/A	ALRSPFCLTINNFMTTNSEFDNYKDKSYLDDEDPEFDQDAHRWDKGGLVTADNGIADRLLQNDKLYNTLKGDWERTDYNLSKNIKVTTGREDGKMYLTREQLNIPHIIKHCQEYRSRAEAGYMDPLAPLMPDGKIGHKWMELPEVIAFEISNKYFGGMPWAAVKRDKSLKAQFYKVVEQEYNSFVCYPGGKLPIPVDVPYPTPVGSTAFFKGANFAGAKQ