Scaffold Ga0256681_10820748

Overview

Basic Information

• Taxon OID: 3300023311
• Scaffold ID: Ga0256681_10820748
• Source Dataset Name: Combined Assembly of Gp0281739, Gp0281740, Gp0281741
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Laval University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1362
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location

• Location Name: SAS2a, Kuujjuarapick, Canada
• Coordinates
  • Lat. (^o): 55.1491
  • Long. (^o): -77.4866

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015302	Metagenome	255	Y
F034448	Metagenome	174	Y
F040990	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256681_108207481	F034448	N/A	MHVNNFSLPRPPEQALDQCHAVYINDPAFRMWAMKKFCGEQNLSLVWSELVETSDVSAFVDEVCAFYFIDPADATLFTLKFK
Ga0256681_108207482	F015302	GGTGG	MSDEYYADTARRLDTIIGGDTSHFLRLQRVRNEYDELARAVPVGQGFLTFYDYVKEYYGVKLEYDGDDLKLEYSVIDDKKYTMFLLKFNR
Ga0256681_108207483	F040990	GAG	MNYYYEIDPKYDGTVFGDKWRYWCMANCSPADNGKMCFKTHDEFVARSSRVWVENVNGVHQIKPDWYGMRGQVDPHEFTLIKLRARTIKWWHDE