NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256681_10727657

Scaffold Ga0256681_10727657


Overview

Basic Information
Taxon OID3300023311 Open in IMG/M
Scaffold IDGa0256681_10727657 Open in IMG/M
Source Dataset NameCombined Assembly of Gp0281739, Gp0281740, Gp0281741
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterLaval University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1240
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location
Location NameSAS2a, Kuujjuarapick, Canada
CoordinatesLat. (o)55.1491Long. (o)-77.4866Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003521Metagenome / Metatranscriptome481Y
F005449Metagenome / Metatranscriptome400Y

Sequences

Protein IDFamilyRBSSequence
Ga0256681_107276571F003521GAGGMKSLVKNIRGYFNRRTKATDGYKEAHVERRTLVIQNGEAASRLMLNEDFALMFNLNRFSMLERLEEADSDEKRIGNAYYVAGVRDFIDFVEKSEYLAKVALKK
Ga0256681_107276572F005449N/AFAMQASTPRIGVNPEFIDAEEIQRGVSALFVLDRKFDPAKHIYEFQAMEGNLAYVQDAMQRFDQDTSRMLGMTNPADTLNPEVMKDGNSGYKLQLAMGPNQLIQDEMVKNCAIGLKDLIYIVWKTMIQYSDDYNMQQLAEAMLPGTGFLDAKSMENFDFIDRNMINIDLALGFLSEENRLTRQQLITQAQAQFAGLVAQLDPSVPELFQKARRPFEDTLYALGVKNCDAYLPTLEEAAKIIQAKASKGPGPAEQELQSKVGLNQAKTKESETVAALNIKKAEDIDTDNMFEMMAAKRGKLSAVEID
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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