Scaffold Ga0209414_1050854

Overview

Basic Information

• Taxon OID: 3300023301
• Scaffold ID: Ga0209414_1050854
• Source Dataset Name: Hypersaline microbial communities from Lake Vida, Antarctica - Brine Hole Two >0.2 micron (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1143
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location

• Location Name: Lake Vida, Antarctica
• Coordinates
  • Lat. (^o): -77.38861
  • Long. (^o): 161.931111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035569	Metagenome	172	Y
F054453	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209414_10508542	F054453	GGA	MKTSTLLKLTCVLITIAALFSSNMFEVFGYALLITITGCSGLICQTLEAKPVVNQPAATDYNKQNYDAKG
Ga0209414_10508545	F035569	AGGAG	MTKQEKLNELQRITGKGKMACDIALSLAGGDIDKAIKRMKISYPGLEVKK